BtaINT0156217 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16080089-16082745:+
Coord C1 exon
chr3:16080089-16080415
Coord A exon
chr3:16080416-16082640
Coord C2 exon
chr3:16082641-16082745
Length
2225 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CCCTGCTCTTTCCCCCTTAGGAG
3' ss Score
11.58
Exon sequences
Seq C1 exon
ATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAGCTGGGGGGCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCGGGGGGGGGCCCGGGGCCGGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCTGGGGCCGGAGGGGCCGGGGCGGGGGCCGCGCCCGGACCGCATCTCCCCCCACGGGGGTCGGTGCCTGGGGATCCCGTCCGCATCCACTGCAACATCACG
Seq A exon
GTGAGGACCCCCTCGCGTGCGCGTCTCCGGGGTCCTCTTGTCTGGGACTCACCCCGCACAGCTTTTTGCTCTCGAAAGACCTGGGAGGCCGAATCCCCTGTCGGGGTTCGGCTCTTTTTCTTCAGGTTGCACTTGTTTCTGACTCTTGAGATTCTGCCATGGACCCAGAATCTCTACCCTTCCTAGTCAGGGACACCCTGACATATGGCGCCTCGACTACCCCTTTCCATTACCCACCCACATCGCAAGGTTCATAATTTTGGCTCATTTTGGTTACTTCACGACTTTTCTTGACACCTGGGAATGCCCCTCTTCCCCGCCTCCCATCTCAAGGTTCCAGGCCTCTTCATTGACTTCAGCTGGTAGGACCTGGCTTGGAATTGTGTAGATTTCAGTGATTTCCCCCTTCTCAGCAGTACCTTTCATTTAGGACGTTGCCACCTGTGAGATCCCTGCCCAGGTGTCTGTCATGCAGTCCCTCTTCCTCTGAATTTTACCAGTGGTAGTTTGCAATTCACTGACCCCTTTGCTTCTTCTCCTTTGGATCGCCTTTTATTCTGGTGTAACCTCTAACTCTCCTCCTTTTGCCCCAGCTGGTAGCTGCCACTCCCATCCTGTTCCCTGTGGATATCTCCAGTTGCCCTGAGTTGTTACCTTTCCTGGTGATGATGGGGATGTGCAAGGGCACTCTCATTTGTTCTGAGTGCTAACAGTTCCTTTTCTCCCAGTGAGCATCATTCCATCCTAGGTGTGCGGGGCTGGGAAACACCTTACACATCTTCTACCTAGGCTATCTTCAAACATTCTGTGAATAGCGTTGGCATCTGGGAATTTGGGAATACCTGATACTGCATGGTATAGCACTTAAAAGGATTGATCCCACCTGATGTGGTAGTGTTGACCCTGCTGGGAGTACCAGGTCGCGAGCCAGGGGACAGTACTTTATCCAGGCAGGCACACTGCAAGTGGGAGTAGTCTGGAGAAAGACAGACTTGTGAATTGTGTGGCACTTGGGGGCCTGAATTCAAATCACATGGTTCTTGTTTACTATCCTTTTCTTGCATCAAACCAGGTCAAGGTTTGGTGAGGCAAGCCTCAGCTTGGGTTGGATGGTGCCCCACCAAAACTCACGTGTTCCATTTTCCTCTCTCACTTTTTTTCATACTAAAAAGTCAAGATTGAAGGACTAGGTGTGGCTCTGTGAGCCGACAACTTGAGCATCTTTGATAATTTGTTTTCCTCCAGCATTGAGGATTAGAGCAGTGGCAGAGTTTAAGACCTTTTTAGGTTCTCTTGGCCTCCTATGTGGAAACTTCTGGGATTGATTCCTTACCTGAATTATGCTTTCAATTCCTTAAGGGTAGGTTTGCCCCCTTTTGCTTGACTTCCCAGTTGCCAGAGGCCATCTACCGTCTTTGTCCCTGGAAAGAGGTTAGTTTAGAAGATTCTGAGACTCCTGTGACCACTATAAAGAAGACTTGGCCTGAACTGGCCCCCTTGATTTGGGCAGAGGGGGAGTCTGGTCAGGCTGCATTTGGCACCACAGCTCAAGAATGCTGGGAATGTTAGCAGCGTAGGCTTCTTTCTCCCAGCCTGCCATGTGGAGCCCTACAGCCTACGCCTGGACTGAGAGGGTGGCAGGTTCCCAAAGGAGAGGTGGGGAGAAGTGGCCTCTGAGGCGTTCTGTTAGGAGTGGAGTGGGAAGATTCTTCCTGCCACCCTTCTACTTTCAGGGTTTAGAGACATAATCTAGCTTTTAATTTCTCCGTCCCTAGCTAAAATGAAAGTAATCTGTGGTCTCTGGTTTTTTTTTCTGCCAGTGTGATTGTGATGAGGCGATCCTTTCCCCCACTGATTAGGGAGGGTCGGAGGCCTGGGTGTTGGGTGTGGGAGAACTTAAGGTCTGGAGCTTGTTGAGGCAACACAGGAGGTAGGAAACCATACTCATCCTCAGCGCAGTTTGGCTGCGCTGCTTCTCTGATGTTTACTCTTGAAAGAAAAGGACCAGGCTTCTTGGAAAGGGTCATCCCAGGGACTTTTTTCTCCTGGTCTGGGATTTGTTGGGAACCTGCCTGCTGAGCTGGGCTTGTGTGTGTGTGTTGGGGGGAGGGGGCGGATGGTGGAGAGCAAAGGGACTGGAAGTCTCGGGGCATGGAAGGCAGGCAAGATCTAGCTTCCCCCAGAGTCTCCCGTCTTGACTGCCCTCCCTGCTCTTTCCCCCTTAG
Seq C2 exon
GAGTCATACCCTGCGGTGCCCCCCATCTGGTCAGTGGAGTCCGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515:ENSBTAT00000009889:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(56.1=63.3)
A:
NA
C2:
PF0577317=RWD=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]