HsaINT0176406 @ hg19
Intron Retention
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:HGNC Symbol;Acc:15698]
Coordinates
chr1:154528336-154531120:-
Coord C1 exon
chr1:154530703-154531120
Coord A exon
chr1:154528441-154530702
Coord C2 exon
chr1:154528336-154528440
Length
2262 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TATTGCTCTTTTCCCTTCAGGAG
3' ss Score
11.11
Exon sequences
Seq C1 exon
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGCCCGGAGCGCAGGCCGGAGGCTCCCGGCCCGCCGGCCCCGGAGCGGAGCGGAGCGGAGGATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAGCTGGGGGGCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCAGGGGGGGGCCCGGGGCCGGGGCCCTGCCTGAGGCGAGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCTGGGGCCGGAGGGGCCGGGGCGGGGGCCGCGCCCGGACCGCATCTCCCCCCACGGGGGTCGGTGCCTGGGGATCCTGTCCGCATCCACTGCAACATCACG
Seq A exon
GTGAGGACCCCCTCGCGTGCGCCTCTGTGGGGGCCCCTTGTCAGGGACCCAGGATCACTCCATCCAGCTTTTTGCTCTCGAAGGACCTGGGAGGCCGAAGCCCCTCTCAGGGCTCAGTTCTTTCTCTCCAGGTTACATTTGTTTCTGCTGCTTGAGGTTATGCAGTGCACCCAGAATCTCTACCATTGACCCCAATAGCAAGGGACACCCCGACATATGGCGCCTAGACTACCCGTTTCCACGAACCCACCCACATCCCAAGGTTCATGATTTTGGCTCTTTTTGGCTACTCCTCCACAACTTTACCTTGCCACCTAGGAATGCGTCTTTCTTCCCCTTACTCTTATTTCAAGGTTTTAGGCCTCGGCACTGACCCTAACTGCAAAGACCTGGCCTGAAACTCACTGCACATTTCAGCGATGCCCCCTTCTCAGTAGTACCTCTGACTTAGGAGGTTGCCACCTGTGGGATCCCCGCCTAGGCATCCCTCATGCAGACCCTCTTGCTCTCTCAACTTCACCAAGTGATAGTTTGCAATTCATTGACTCCTCTTCCTTCTCTCCTTTGGATTCTTTTTCTGGTGTAACCTCTAACTCTCCTCTTTTTGCCTCAGCTGGTAGCAGTTCTGCCACTCCCCTGCCTGTTCCCTATGGATATGTCCATTTGCCCTGGGTTGTTGCTTTTCCTGGTAATGATAGTGATGTGATGTGCGAGGGCTACCCCCATTTATTCTAAGCAGTAACAGTTGCATTTCTCCCCTGTGAGCGTCATTCCATCCTAGGCATACACCTTACATGTCTCCTGCCTGGTCTACCCTCAGACATCCCTTGAACAGAGAATTGGCTTCTGCTAATTTGGGAATGTCTGGTACTGCATGCTATAGCACTTATATTGGTTGATGTTACCTGCTGTGATGGTATTCTCTCTACCGGAGCAGTAGCTGAAATGCTAGCAGACAGTACTTTATCCAGGCAGGCAGACCTAATCGGAGTAGCCTGGGGAAAGGCAGAGTTGTGAATTCTCTGCTACTTGGGGGCCTGAATTCAACTTACTGGTGTTTTCTGTCCGTTTTCTCAATCAAACCAAGTTAAGATTTGGTGAGGTAAAGCCTCAGTTTGGATTGATTGGTGCCCCACCAAAACTCATATGTCCCATTTCTCTTTTCATTTCCTTTCTTTTTTCCTGCTAGAAAGTTAAAATTGAAGGACTAGGAGTGGCTTAGTTAAGTGAAGACTTGGGCATCTTTGATAATTATTTTTCCTCCAGCATTGAGGATTAGAGTCATGGCAATGCTAAGATACCCAGTAGAGGTGGATAAGGTTTCCCTGGCTTGTGTGGGAACCTCGAGTTAATTTTGTTCCTGAATTAAGCTTCTAATTCCTTAAGGGTAGGTTTGCCCCTATCCAGCTGCTCTTTCTGTTGCCAGAGGCCATTTACTGCGTTTGTCCCTGGCAGGAAGTTAAATTTAGGGGGTCCTCAGCCAGACTCCCCATGGCTATAAAGGAGACTTGGCCTAAACTAGCCCCCTTGGTTTGGGCAGAGAGGGAGTCTGGTCAGGCTGCATTTGGCACCGTGGCTCAGGAATGCTGGGAATGTCAGTAGCGTAGGCTTCTTTCTCCCAGCCTGCCATGTGGAGCCCTACAGCCCACGCCTGGACTGAGAAGGTGGCAGGTTCCCAAGGGAGAGGTGGGGAGAATTGGTCTTTGAGGGGCTCTTCTGGAAGTGGTGTGGGTAGATTCTTGCCAGTACCCTTTTACTCTTGGGTTCTGGAGATACAGTCTAGTTTTTATACTTCTTCCCTACTGAACTCTGCTTTTTTCACTTCAGTGTCATTGTGATGAGGTGATCCCTTCCTCAGCCGATTCTGGAGTTTGAAAAGCAAGCTTGGAGGACTGTTCTGGGTCCAGGGAGAACTTGAAGTCTAGAACTTGTATAGGCAGTGCAGGAGATGAGGAGTCCCCCTTCGCTGTTAGCCAAGTTTGGCTGTGCTAGGTTTCCTGGTTTGTACTCTCGAGGAAAGAAAGAAAAGGTTTCAGTCTGCTTCTCGGAAAGGGTCTTCCCAGGGACTGTTTTTCTTCCAGTTTAGAATTTGTTGTGAAGCTGCTTGGTTAGATGCTGACCTAAGTTGGGCTTTTATGTGTGTGTAGGGGGTGGGGGTGGGAAGCAAAGGGGCTAGAAGTCTTGGGGGGAAGAGGACAGGCAAAATCTGGCTTTTCCCAGAGTCACCCATTTTGATTGCTCTTATTGCTCTTTTCCCTTCAG
Seq C2 exon
GAGTCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714-UBE2Q1:NM_017582:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(56.1=63.3)
A:
NA
C2:
PF0577317=RWD=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)