RnoEX0095816 @ rn6
Exon Skipping
Gene
ENSRNOG00000014529 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr8:59740625-59750442:+
Coord C1 exon
chr8:59740625-59740765
Coord A exon
chr8:59744780-59744840
Coord C2 exon
chr8:59750384-59750442
Length
61 bp
Sequences
Splice sites
3' ss Seq
TATGTCTTATGTCTCCACAGGGA
3' ss Score
11.82
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATATAGAAGACTTGGATCACTACGAGATGAAGGAAGAAGAGCCTATTAATGGGAAAAAGTCAGAAGACGAAGGGATTGAAAAAGAAAATTTGGCAATATTGGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAAT
Seq A exon
GGATCTATTCAGTGGAGCTAATAAATGACAGCTTATATGACTGGCACGTCAAACTACACAA
Seq C2 exon
GATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014529_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0017921=UQ_con=FE(12.9=100)
C2:
PF0017921=UQ_con=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGATGAAGGAAGAAGAGCCT
R:
ACAAACGGGGGATCAAATGGG
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]