HsaEX0068791 @ hg38
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin conjugating enzyme E2 Q2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr15:75876187-75879188:+
Coord C1 exon
chr15:75876187-75876271
Coord A exon
chr15:75877961-75878021
Coord C2 exon
chr15:75879098-75879188
Length
61 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTATATCTTAACAGGGA
3' ss Score
9.28
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTGCAGTGTCTGGGTCAGTGCAAGCTTCAGATAGACTTATGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAG
Seq A exon
GGATTTATTCAGTGGAACTCATAAATGACAGTTTATATGACTGGCATGTTAAACTGCAGAA
Seq C2 exon
GGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'26-19,'26-17,27-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.144 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PU(10.9=58.6)
A:
PF0017921=UQ_con=FE(12.8=100)
C2:
PF0017921=UQ_con=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCTGGGTCAGTGCAAG
R:
TGCCTTCTTTTTCTTTTAAGATCTGA
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development