HsaEX0068790 @ hg38
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin conjugating enzyme E2 Q2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr15:75873428-75878021:+
Coord C1 exon
chr15:75873428-75873568
Coord A exon
chr15:75876187-75876271
Coord C2 exon
chr15:75877961-75878021
Length
85 bp
Sequences
Splice sites
3' ss Seq
CAGTGGCTTTTGTGTTTCAGGGT
3' ss Score
8.89
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATATAGAAGACTTAGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATTTAAAT
Seq A exon
GGTGCAGTGTCTGGGTCAGTGCAAGCTTCAGATAGACTTATGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAG
Seq C2 exon
GGATTTATTCAGTGGAACTCATAAATGACAGTTTATATGACTGGCATGTTAAACTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'22-17,'22-15,26-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.630 A=0.144 C2=0.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=PD(6.5=17.0)
A:
PF0017921=UQ_con=PU(10.9=58.6)
C2:
PF0017921=UQ_con=FE(12.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGAAGGAAGAAGAGCCT
R:
TCTGCAGTTTAACATGCCAGTCA
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development