GgaEX6007409 @ galGal4
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3006512-3019648:-
Coord C1 exon
chr10:3019508-3019648
Coord A exon
chr10:3012500-3012584
Coord C2 exon
chr10:3006512-3006572
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTTGTTTGTTTCAGGGT
3' ss Score
12.46
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GACATTGAAGATCTGGATCACTATGATATGAAGGAGGAGGAACCAGTTGACGGGAAGAAATCCGAGGATGAAGGCATTGAAAAAGAGAACCTTGCAATCTTAGAAAAAATCAGAAAAAATCAAAGGCAAGATCACTTAAAT
Seq A exon
GGTGCAGTCTCTGGGTCAGTTCAGGCTTCAGATCGACTTATGAAGGAACTCAGGGATATATATAGATCACAGAGCTATAAAACAG
Seq C2 exon
GGATATATTCAGTGGAACTGGTAAATGACAGCTTGTATGAATGGCATGTTAAGCTTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'7-13,'7-8,8-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=0.172 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0017921=UQ_con=PU(10.9=58.6)
C2:
PF0017921=UQ_con=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGGAGGAACCAGTTGA
R:
GCTTAACATGCCATTCATACAAGCT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]