DreEX6102966 @ danRer10
Exon Skipping
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:28994992-29007228:-
Coord C1 exon
chr25:29007073-29007228
Coord A exon
chr25:29001711-29001795
Coord C2 exon
chr25:28994992-28995052
Length
85 bp
Sequences
Splice sites
3' ss Seq
CGGATTTTGTTGTGTTTTAGGGT
3' ss Score
10.98
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CAGGATATTGAAGATCTAGACCACTATGAGATGAAAGAGGAACCAGTGGATGGGAAAAAGTCGGAGGACGATGGCATAGAGAAGGAGAACCTGGCCATTCTGGAGAAAATCCGCAAGAACCAGAGGCAGGACCACTTGAACGTAAGTGTCCATTCG
Seq A exon
GGTGCGGTGTCCGGTTCAGTTCAGGCCTCCGACCGCCTCATGAAGGAACTCAGGGAGATCTATAGATCACAGAGTTATAAGACAG
Seq C2 exon
GTATCTATTCAGTGGAGCTAGTAAACGATAGCCTGTATGAGTGGCATGTCAAGTTAAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990-'7-7,'7-6,10-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0017921=UQ_con=PU(10.9=58.6)
C2:
PF0017921=UQ_con=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGATGGGAAAAAGTCGGA
R:
ACTTGACATGCCACTCATACAGG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]