BtaEX6077445 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31674616-31679386:+
Coord C1 exon
chr21:31674616-31674756
Coord A exon
chr21:31677881-31677965
Coord C2 exon
chr21:31679326-31679386
Length
85 bp
Sequences
Splice sites
3' ss Seq
CAGCAAGTTTTATATTTCAGGGT
3' ss Score
4.79
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATATAGAAGACTTGGATCATTATGAGATGAAGGAAGAAGAGCCCATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATCTAAAT
Seq A exon
GGTGCAGTGTCTGGGTCTGTACAAGCTTCAGATAGACTTATGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAG
Seq C2 exon
GGATTTATTCAGTGGAACTCATAAATGACAGTTTATATGACTGGCATGTTAAACTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=PD(10.0=27.7)
A:
PF0017921=UQ_con=PU(10.9=58.6)
C2:
PF0017921=UQ_con=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGAAGGAAGAAGAGCCCA
R:
TCTGCAGTTTAACATGCCAGTCA
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]