GgaEX0003867 @ galGal4
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3004121-3012584:-
Coord C1 exon
chr10:3012500-3012584
Coord A exon
chr10:3006512-3006572
Coord C2 exon
chr10:3004121-3004211
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTATCTAATATTTCCACAGGGA
3' ss Score
9.02
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTGCAGTCTCTGGGTCAGTTCAGGCTTCAGATCGACTTATGAAGGAACTCAGGGATATATATAGATCACAGAGCTATAAAACAG
Seq A exon
GGATATATTCAGTGGAACTGGTAAATGACAGCTTGTATGAATGGCATGTTAAGCTTCTAAA
Seq C2 exon
GGTTGATCCTGACAGCCCTCTGCATAGTGATCTTCAGGTCTTAAAAGAAAAAGAAGGTGTAGAATACATTTTACTCAACTTCTCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PU(10.9=58.6)
A:
PF0017921=UQ_con=FE(12.8=100)
C2:
PF0017921=UQ_con=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCTCTGGGTCAGTTCA
R:
ACACCTTCTTTTTCTTTTAAGACCTG
Band lengths:
143-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]