RnoEX0097502 @ rn6
Exon Skipping
Gene
ENSRNOG00000017644 | Usp6nl
Description
USP6 N-terminal like [Source:RGD Symbol;Acc:1311786]
Coordinates
chr17:75797811-75804951:-
Coord C1 exon
chr17:75804851-75804951
Coord A exon
chr17:75802162-75802242
Coord C2 exon
chr17:75797811-75797891
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTGCATCTCTTTCAGTCA
3' ss Score
7.14
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TTTGCTGCCGTTAGAGTCACAGTCCACCTCCATGATGACATTAAACATCGACTTAGAGCTGCTGGACACTCTGTTGACTTGCAGTGTCCTACATTTGCAAG
Seq A exon
TCAGCTGCTGGGTACAGCCTCTCAGAACAGCTATGCTAGCTCCAGCCTGCAGGCATGACAGAGTGTCGCGGACAGTGTCAG
Seq C2 exon
CAAAAGCAACTGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCTGAAGAGATGGGAGAGATACAAGAACACTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017644-'18-12,'18-11,19-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000046266fB16248
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCCGTTAGAGTCACAG
R:
TGTATCTCTCCCATCTCTTCAGCA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]