RnoEX0097510 @ rn6
Exon Skipping
Gene
ENSRNOG00000017644 | Usp6nl
Description
USP6 N-terminal like [Source:RGD Symbol;Acc:1311786]
Coordinates
chr17:75797811-75813430:-
Coord C1 exon
chr17:75813348-75813430
Coord A exon
chr17:75807529-75807568
Coord C2 exon
chr17:75797811-75797891
Length
40 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTGTTCTCTGCAGTGA
3' ss Score
9.92
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGACGGGAAGGTGCAGAGATCGAGCCCTGGGAAGATGCTGATTATCTTGTTTACAAAGTCACCGATAGATTTGGCTTTTTACA
Seq A exon
TGAGGAGGAGCTCCCGTATCCTAACGCAGCCGCGGACCGG
Seq C2 exon
CAAAAGCAACTGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCTGAAGAGATGGGAGAGATACAAGAACACTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017644_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGGAAGGTGCAGAGATC
R:
TCAGCATTTTCAGCCACTTGGA
Band lengths:
132-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]