HsaEX1043277 @ hg38
Exon Skipping
Gene
ENSG00000148429 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16858]
Coordinates
chr10:11509595-11525468:-
Coord C1 exon
chr10:11525386-11525468
Coord A exon
chr10:11518535-11518574
Coord C2 exon
chr10:11509595-11509675
Length
40 bp
Sequences
Splice sites
3' ss Seq
ATACTGTTTTTCCTCTGCAGTGA
3' ss Score
9.65
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAGATTTGGCTTTTTACA
Seq A exon
TGAGGAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGG
Seq C2 exon
CAAAAGCACCTGGAAATTGAAAGAACTACCAAATGGCTGAAAATGCTGAAAGGATGGGAAAAATACAAGAACACTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148429_MULTIEX2-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAGAAGGTGCAGAGATTG
R:
CCATCCTTTCAGCATTTTCAGCC
Band lengths:
140-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains