MmuEX0051102 @ mm10
Exon Skipping
Gene
ENSMUSG00000039046 | Usp6nl
Description
USP6 N-terminal like [Source:MGI Symbol;Acc:MGI:2138893]
Coordinates
chr2:6394473-6409009:+
Coord C1 exon
chr2:6394473-6394555
Coord A exon
chr2:6400280-6400319
Coord C2 exon
chr2:6408929-6409009
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGTTCTCTGCAGTGA
3' ss Score
9.12
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGGCGGGAAGGTGCAGAGATCGAGCCCTGGGAAGATGCTGATTATCTTGTTTACAAAGTCACCGATAGATTTGGCTTTTTACA
Seq A exon
TGAGGAGGAGCTCCCATACCATAATGCAGCTGCGGACCGG
Seq C2 exon
CAAAAGCAACTGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCTGAAAAAATGGGAGAGATACAAGAACACCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039046-'9-13,'9-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCGAGCCCTGGGAAGAT
R:
TCGGTGTTCTTGTATCTCTCCCA
Band lengths:
145-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types