DreEX0068338 @ danRer10
Exon Skipping
Gene
ENSDARG00000011088 | si:ch211-288d18.1
Description
si:ch211-288d18.1 [Source:ZFIN;Acc:ZDB-GENE-060503-323]
Coordinates
chr7:48751517-48755237:+
Coord C1 exon
chr7:48751517-48751602
Coord A exon
chr7:48753072-48753111
Coord C2 exon
chr7:48755157-48755237
Length
40 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGTTTTTCCCACAGTGA
3' ss Score
9.55
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTAGAGACGCAGGAGTTGAGATCGATCCTTGGGAGGATGCAGACTACAGCATATACAGAGTCACAGATCGCTTCGGATTTCTTCA
Seq A exon
TGAAGAAGAATTACCCACCCCCAGTGCACTTGAAGAGAAG
Seq C2 exon
CAAAAACAGGTCGAGATTGAGAGGGTGCAGAAATGGCTGAAGATGCTAAAAAACTGGAGCAAGTATAGAAACAGTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011088_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAGACGCAGGAGTTGAG
R:
AGCATCTTCAGCCATTTCTGCA
Band lengths:
133-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]