GgaEX1001668 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15427190-15427888:-
Coord C1 exon
chr5:15427803-15427888
Coord A exon
chr5:15427681-15427720
Coord C2 exon
chr5:15427190-15427270
Length
40 bp
Sequences
Splice sites
3' ss Seq
GTCACTCCTTGCTTTTCCAGCGA
3' ss Score
9.26
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCAGGCAGGAGGGAGCCACGATTGACCCATGGGAAGATGCTGATTTCACACTGTACAAAGTTACTGACCGCTTTGGGTTTCTGCA
Seq A exon
CGAGCAGGAGCTGCCAACCCGCACCGCCTTGGAGGAGAAG
Seq C2 exon
CAAAAGCAGCAGGAAATTGAGCGCGTGGACAAGTGGCTGAAGATGCTGAAGAAATGGGGCAAATACAGAAACAGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897-'22-18,'22-16,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.357 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGATTGACCCATGGGAAG
R:
TTGCCCCATTTCTTCAGCATCT
Band lengths:
132-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]