DreEX0039234 @ danRer10
Exon Skipping
Gene
ENSDARG00000051836 | im:6904482
Description
im:6904482 [Source:ZFIN;Acc:ZDB-GENE-050506-81]
Coordinates
chr25:24045111-24048199:+
Coord C1 exon
chr25:24045111-24045196
Coord A exon
chr25:24046145-24046184
Coord C2 exon
chr25:24048119-24048199
Length
40 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCTTATACTTTCCAGTGA
3' ss Score
7.23
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGCAGGCAGGAGGGTGTGCACATTAACCCCTGGGAGGATGGAGACTACAGCATCTTTAAGTTCACAGACCGCTTCGGGTTCCTGCA
Seq A exon
TGAAGAGGAATTGCCAACACCAACTGCAGTGGAGGAGAAG
Seq C2 exon
TACAAACTCCAGGAGATGGAAAGAGAGGAAAAATGGATTAAGATGGTGAAAAAGTGGGAAAAGTATCATAATAGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051836-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACATTAACCCCTGGGAG
R:
ACTTTTCCCACTTTTTCACCATCT
Band lengths:
135-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]