GgaEX1062738 @ galGal4
Exon Skipping
Gene
ENSGALG00000006706 | USP6NL
Description
USP6 N-terminal-like protein [Source:RefSeq peptide;Acc:NP_001026011]
Coordinates
chr1:5924867-5953881:-
Coord C1 exon
chr1:5953799-5953881
Coord A exon
chr1:5937907-5937946
Coord C2 exon
chr1:5924867-5924974
Length
40 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTCTTTGTTTTCAGTCC
3' ss Score
10.2
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGACGGGATGGTGCACAGATAGAACCATGGGAAGATGCTGACTATCGCCTGTACAAGGTTACAGATAGATTTGGGTTTCTACA
Seq A exon
TCCAGAGGAGCTTCCTGTCCATGATGCAGCAATAGAAAAA
Seq C2 exon
TTTCACAGGAGAATTTATAAAGGAATCCCATTGCAGTTCAGAGGGCAAGTTTGGTCTTTACTACTTGATGTCCCTAAAATGAAAGAAGAAATGAAAGACTTGTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706_MULTIEX1-3/13=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(11.9=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGATGGTGCACAGATAGA
R:
AACTTGCCCTCTGAACTGCAA
Band lengths:
132-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]