RnoEX0100978 @ rn6
Exon Skipping
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109071777-109100937:-
Coord C1 exon
chr7:109100849-109100937
Coord A exon
chr7:109100627-109100774
Coord C2 exon
chr7:109071777-109071915
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTGTTGACTTTGTTTTTCAGCCC
3' ss Score
8.93
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GGAAGCAATTCAAGTGCACGGTGTGTGACTACACAGCTGCCCAGAAACCACAGCTGCTGCGACACATGGAGCAGCATGCCTCCTTCAAG
Seq A exon
CCCTTTAGCTGTCATATGTGGAGTTTACTTTGTGCTCCCTCTTTCCATAATCATGGAGTTTCTCTGTGTTTTGGAAACCAAGTCAAGGAAGAGTGTTCAAGAGGATGCAGACAGAAAAGAAGGCATGCACTTCCCACTCAAAGCTTGA
Seq C2 exon
CCTTTCCGCTGCGCTCACTGTCATTATTCATGTAACATCTCTGGATCTCTGAAACGGCACTACAACAGGAAGCACCCCAACGAGGAGTATGCCAACGTGGGCAGCGGGGAGCTTGCAGCTGAAGCCCTCATCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=80.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000068291fB16859
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAATTCAAGTGCACGG
R:
TTGTTGGATGAGGGCTTCAGC
Band lengths:
227-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]