RnoEX0100973 @ rn6
Exon Skipping
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109071777-109119133:-
Coord C1 exon
chr7:109118960-109119133
Coord A exon
chr7:109100849-109100937
Coord C2 exon
chr7:109071777-109071915
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCCGCTTCATTCCAGGGA
3' ss Score
9.4
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGTGAAGCCCTTCAAATGTTCTTTGTGTGAGTATGCAACTCGTAGCAAGAGCAACCTCAAAGCTCATATGAATCGTCACAGCACTGAGAAGACTCACCTCTGTGACATGTGTGGCAAGAAATTCAAATCCAAAGGGACATTAAAGAGTCATAAGCTCCTTCACACATCTGATG
Seq A exon
GGAAGCAATTCAAGTGCACGGTGTGTGACTACACAGCTGCCCAGAAACCACAGCTGCTGCGACACATGGAGCAGCATGCCTCCTTCAAG
Seq C2 exon
CCTTTCCGCTGCGCTCACTGTCATTATTCATGTAACATCTCTGGATCTCTGAAACGGCACTACAACAGGAAGCACCCCAACGAGGAGTATGCCAACGTGGGCAGCGGGGAGCTTGCAGCTGAAGCCCTCATCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140-'23-22,'23-17,28-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
A:
PF139091=zf-H2C2_5=WD(100=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTGTGACATGTGTGGC
R:
GTTGGCATACTCCTCGTTGGG
Band lengths:
175-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]