DreEX6040875 @ danRer10
Exon Skipping
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25437881-25439567:+
Coord C1 exon
chr16:25437881-25438054
Coord A exon
chr16:25439261-25439349
Coord C2 exon
chr16:25439429-25439567
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATGTTCTTCTATGTTGTAGGAA
3' ss Score
9.46
5' ss Seq
AAAGTAATG
5' ss Score
1.16
Exon sequences
Seq C1 exon
GACTTAAGCCATTTAAATGCTCACAATGTGATTATGCCTCAAGAAGCAAGAGCAACCTCAAAGCTCACATGAACAGACACAACACTGAGAAAACACATCTTTGTGACCTCTGTGGGAAAAAGTTCAAGTCCAAATGCACTCTGAAAAGCCATAAGCTTATGCACACAGCAGACG
Seq A exon
GAAAACAGTTCAGATGCACTGAGTGTGACTTCACTGCTGCTCTGAAGCCGCATCTCCTTCGTCACATGGAGCAACATGCCTCTTTTAAA
Seq C2 exon
CCTTTCCGTTGCGCACACTGCCACTACTCATGCAACATTTCAGGCTCGCTGAAAAGACACTATAACAAGAAACATCCCAACATGCAGTACATCAATGCTGGAACAGGGGCATCTGCTTCTGAATCTGTGACAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
A:
PF139091=zf-H2C2_5=WD(100=80.0)
C2:
PF139091=zf-H2C2_5=WD(100=53.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAGCAACCTCAAAGCT
R:
GCGAGCCTGAAATGTTGCATG
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]