GgaEX0023871 @ galGal4
Exon Skipping
Gene
ENSGALG00000016207 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr2:142147185-142157628:-
Coord C1 exon
chr2:142157455-142157628
Coord A exon
chr2:142153477-142153565
Coord C2 exon
chr2:142147185-142147323
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTACCTGTTTCAGGAA
3' ss Score
9.97
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGTCAAACCCTTCAAATGTTCTCTCTGTGAGTATGCCACTCGCAGCAAGAGTAACTTGAAAGCGCATATGAATCGTCACAGCACTGAGAAAACACACCTTTGTGATATGTGTGGGAAAAAGTTCAAATCAAAAAGCACTTTGAAGAGCCATAAACTCCTTCATACTGCTGATG
Seq A exon
GAAAGCAGTTTAAATGTACAGTATGTGACTATACAGCTGCTCAAAAGCCACAACTCCTACGTCATATGGAACAACATGTCTCTTTCAAG
Seq C2 exon
CCTTTCCGGTGTGCACATTGCCATTATTCCTGCAACATATCTGGTTCTCTGAAGAGGCATTACAACAGAAAGCATCCTAATGAAGAATATGTAAATGTAGGTTCTGGGGAGCCTGCCGCAGAAGCCCTTATCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207-'17-17,'17-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.310
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
A:
PF139091=zf-H2C2_5=WD(100=76.7)
C2:
PF139091=zf-H2C2_5=WD(100=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCGCAGCAAGAGTAACT
R:
TGCAGGAATAATGGCAATGTGC
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]