BtaEX0040918 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8236707-8267687:+
Coord C1 exon
chr14:8236707-8236880
Coord A exon
chr14:8250404-8250492
Coord C2 exon
chr14:8267549-8267687
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCTCCTTCTCTTCAGGCA
3' ss Score
10.84
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGTGAAGCCCTTCAAGTGTTCCTTGTGTGAGTACGCAACTCGTAGCAAGAGCAACCTCAAGGCTCACATGAATCGTCACAGCACTGAGAAGACCCACCTGTGTGACATGTGTGGCAAGAAGTTCAAGTCCAAAGGGACGCTGAAAAGCCACAAGCTCCTTCACACCGCCGACG
Seq A exon
GCAAGCAGTTCAAGTGCACGGTGTGTGACTACACGGCTGCCCAGAAGCCACAGCTGCTACGGCACATGGAACAGCACGCCTCCTTCAAG
Seq C2 exon
CCTTTCCGCTGCGCCCACTGCCATTACTCATGCAACATCTCGGGCTCCCTGAAGCGGCACTACAACCGGAAGCACCCCAACGAGGAGTACAGCAACGTGGGCACCGGGGAGCTGGCGGCCGACGCGCTCATCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
A:
PF139091=zf-H2C2_5=WD(100=80.0)
C2:
PF139091=zf-H2C2_5=WD(100=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACCCACCTGTGTGACA
R:
GTTGCTGTACTCCTCGTTGGG
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development