GgaEX0023871 @ galGal3
Exon Skipping
Gene
ENSGALG00000016207 | ZFAT
Description
NA
Coordinates
chr2:148252403-148262847:-
Coord C1 exon
chr2:148262674-148262847
Coord A exon
chr2:148258695-148258783
Coord C2 exon
chr2:148252403-148252541
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTACCTGTTTCAGGAA
3' ss Score
9.97
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGTCAAACCCTTCAAATGTTCTCTCTGTGAGTATGCCACTCGCAGCAAGAGTAACTTGAAAGCGCATATGAATCGTCACAGCACTGAGAAAACACACCTTTGTGATATGTGTGGGAAAAAGTTCAAATCAAAAAGCACTTTGAAGAGCCATAAACTCCTTCATACTGCTGATG
Seq A exon
GAAAGCAGTTTAAATGTACAGTATGTGACTATACAGCTGCTCAAAAGCCACAACTCCTACGTCATATGGAACAACATGTCTCTTTCAAG
Seq C2 exon
CCTTTCCGGTGTGCACATTGCCATTATTCCTGCAACATATCTGGTTCTCTGAAGAGGCATTACAACAGAAAGCATCCTAATGAAGAATATGTAAATGTAGGTTCTGGGGAGCCTGCCGCAGAAGCCCTTATCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207-'11-13,'11-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.252
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
A:
PF139091=zf-H2C2_5=WD(100=76.7)
C2:
PF139091=zf-H2C2_5=WD(100=53.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCGCAGCAAGAGTAACT
R:
TGCAGGAATAATGGCAATGTGC
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]