MmuEX0052981 @ mm9
Exon Skipping
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:67950498-67997488:-
Coord C1 exon
chr15:67997315-67997488
Coord A exon
chr15:67978065-67978153
Coord C2 exon
chr15:67950498-67950636
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCCGCTTCATTCCAGGGA
3' ss Score
9.4
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGTGAAGCCCTTCAAGTGTTCTCTGTGTGAATATGCAACTCGTAGCAAGAGCAACCTCAAAGCTCATATGAATCGTCACAGCACTGAGAAGACCCACCTCTGTGACATGTGTGGCAAGAAATTCAAATCCAAAGGGACACTGAAAAGTCATAAGCTCCTTCACACGTCTGATG
Seq A exon
GGAAGCAATTCAAGTGCACGGTGTGTGACTACACAGCAGCCCAGAAACCCCAGCTGCTGCGACACATGGAGCAGCATGCCTCCTTCAAG
Seq C2 exon
CCTTTCCGCTGTGCTCACTGTCATTACTCTTGTAACATCTCTGGATCTCTGAAAAGACACTACAACAGGAAGCACCCCAATGAGGAGTACACCAACGTGGGCAGCGGGGAGCTCGCAGCTGAAGCCCTCATCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
A:
PF139091=zf-H2C2_5=WD(100=80.0)
C2:
PF139091=zf-H2C2_5=WD(100=53.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGCACTGAGAAGACCCA
R:
CATTGGGGTGCTTCCTGTTGT
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types