RnoEX0100979 @ rn6
Exon Skipping
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109135866-109160097:-
Coord C1 exon
chr7:109159849-109160097
Coord A exon
chr7:109137983-109138006
Coord C2 exon
chr7:109135866-109136051
Length
24 bp
Sequences
Splice sites
3' ss Seq
ACCCAGACTGTTTCCTGCAGGTC
3' ss Score
7.72
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
AGTTTTTGGTTATGAAGAGAAAGAGAGGCAGGCCTAAGGGTTCCACAAAGAAGCCCAGCACTGAAGAGGAAGTAGTAGAAAACCTCGTGAGCCCCATTGAGGATGGTCCCCTGGCTCCAGAAGAAGGGAGCAGACTGGCCCCTAGCAGCTTGGAGTGTAGCAAGTGCTGCCGGAAGTTTTCCAACACGCGCCAGCTGCGAAAGCACATCTGCATCATTGTGCTGAACCTGGGTGAAGAGGGAGATGCAG
Seq A exon
GTCTGGAGATGATCCAGGAGCCTG
Seq C2 exon
GTAACGAGTCAGACCTTGATCTAGAAAAGACATACAAAGAAGATGATCGAGAAAAAACTTCAAAAAGACCCCGGGCTCAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAAGAGGCAGGGCAGCTTTCTGGAGCGAAGAAACCTATCATCAGCGTGGTCTTAACTGCTCATGAAGCAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140_MULTIEX2-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=1.000 C2=0.579
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000068291fB16860
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTGGGTGAAGAGGGAG
R:
GCCCGGGGTCTTTTTGAAGTT
Band lengths:
103-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]