RnoEX0100980 @ rn6
Exon Skipping
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109128602-109160097:-
Coord C1 exon
chr7:109159849-109160097
Coord A exon
chr7:109135866-109136051
Coord C2 exon
chr7:109128602-109130040
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCTTGGCATTTGCTCCCTAGGTA
3' ss Score
9.13
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AGTTTTTGGTTATGAAGAGAAAGAGAGGCAGGCCTAAGGGTTCCACAAAGAAGCCCAGCACTGAAGAGGAAGTAGTAGAAAACCTCGTGAGCCCCATTGAGGATGGTCCCCTGGCTCCAGAAGAAGGGAGCAGACTGGCCCCTAGCAGCTTGGAGTGTAGCAAGTGCTGCCGGAAGTTTTCCAACACGCGCCAGCTGCGAAAGCACATCTGCATCATTGTGCTGAACCTGGGTGAAGAGGGAGATGCAG
Seq A exon
GTAACGAGTCAGACCTTGATCTAGAAAAGACATACAAAGAAGATGATCGAGAAAAAACTTCAAAAAGACCCCGGGCTCAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAAGAGGCAGGGCAGCTTTCTGGAGCGAAGAAACCTATCATCAGCGTGGTCTTAACTGCTCATGAAGCAATTCCAG
Seq C2 exon
GTTAGGTCCCACCCAGTTGAAGATCTTCACTTGTGAATACTGCAACAAGGTGTTCAAGTTCAAGCACTCACTGCAGGCCCACTTGAGGATCCACACTAATGAGAAGCCATACAAGTGCTCCCAGTGCAGCTATGCCAGCGCCATCAAGGCTAACCTCAATGTTCACTTGCGCAAGCACACTGGAGAGAAGTTTGCCTGTGACTATTGCTCCTTCACCTGCCTCAGCAAAGGCCACCTCAAGGTACACATTGAGCGAGTACACAAGAAAATCAAACAGCATTGCCGCTTCTGCAAGAAGAAATACTCAGATGTCAAGAACCTCATCAAGCACATCCGGGACATGCATGACCCACAGGACAAGAAGGTCAAGGAGGCCTTAGATGAGCTACGCCTAATGACGAGGGAAGGCAAGCGGCAGCTGCTTTATGACTGTCATATCTGTGAGCGCAAGTTCAAGAATGAGTTAGACCGAGACCGCCACATGCTGGTTCATGGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140_MULTIEX2-2/6=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.579 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4),PF0009621=zf-C2H2=WD(100=5.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGGTGAAGAGGGAGATG
R:
TGAGGCAGGTGAAGGAGCAAT
Band lengths:
248-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]