GgaEX0023873 @ galGal3
Exon Skipping
Gene
ENSGALG00000016207 | ZFAT
Description
NA
Coordinates
chr2:148278883-148293502:-
Coord C1 exon
chr2:148293245-148293502
Coord A exon
chr2:148283391-148283564
Coord C2 exon
chr2:148278883-148279033
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTTTGCTCTTTAGGTA
3' ss Score
10.37
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
AGCTTGCAGTGAAGAAGAAAAGGGGCAGGCCAAAAGGATCTACTAAGAAGTTATGTGTGGATGAAGATGTTGCAGAAAATAACTCTTCTCTGAATGAAGAAGCTCAGACTGGGACAGAAGAAGGACCAGAAGTGACTGAAGTCTCACCAGGCAGCTTGGAATGTAGGAAATGCAATCGGAAGTTCTCTAACATGCGTCAGCTGAGGAAACATATCTGCATTATTGTTTTGAATGAAGGAGAAGAAGAAGGAGATGGAG
Seq A exon
GTAATGATTCTGACGTTGACCTTGACAGGAAGGAAGATGAGCGAGAAAAAACTCCAAAGAGGCCCAGAGTACAGAAAACAGAGAAAACTCCATCAACTAAGGAGACTGAACAGGTTCCAGGAGCTAAAAATCCTATAATAAGTGTGGTTTTGACAGCCCATGAAGCTATTCCAG
Seq C2 exon
GAGCCACAAAAATTGTTCCAGTTGAGGCTGCACCCCAAGAAAGTGAACCCACTACTCCAGAAACAGTGGTTCAAGACCCATCACAACGAAGAGGATATCAAGAATATGCAATTCAACAGACTCCATATGAACAGACAATGAAATCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207-'3-5,'3-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=0.847 C2=0.882
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=25.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGAAGAAGGACCAGA
R:
TCCTCTTCGTTGTGATGGGTCT
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]