GgaEX0023873 @ galGal4
Exon Skipping
Gene
ENSGALG00000016207 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr2:142173245-142187863:-
Coord C1 exon
chr2:142187606-142187863
Coord A exon
chr2:142177752-142177925
Coord C2 exon
chr2:142173245-142173395
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTTTGCTCTTTAGGTA
3' ss Score
10.37
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
AGCTTGCAGTGAAGAAGAAAAGGGGCAGGCCAAAAGGATCTACTAAGAAGTTATGTGTGGATGAAGATGTTGCAGAAAATAACTCTTCTCTGAATGAAGAAGCTCAGACTGGGACAGAAGAAGGACCAGAAGTGACTGAAGTCTCACCAGGCAGCTTGGAATGTAGGAAATGCAATCGGAAGTTCTCTAACATGCGTCAGCTGAGGAAACATATCTGCATTATTGTTTTGAATGAAGGAGAAGAAGAAGGAGATGGAG
Seq A exon
GTAATGATTCTGACGTTGACCTTGACAGGAAGGAAGATGAGCGAGAAAAAACTCCAAAGAGGCCCAGAGTACAGAAAACAGAGAAAACTCCATCAACTAAGGAGACTGAACAGGTTCCAGGAGCTAAAAATCCTATAATAAGTGTGGTTTTGACAGCCCATGAAGCTATTCCAG
Seq C2 exon
GAGCCACAAAAATTGTTCCAGTTGAGGCTGCACCCCAAGAAAGTGAACCCACTACTCCAGAAACAGTGGTTCAAGACCCATCACAACGAAGAGGATATCAAGAATATGCAATTCAACAGACTCCATATGAACAGACAATGAAATCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=0.847 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGAAGAAGGACCAGA
R:
TCCTCTTCGTTGTGATGGGTCT
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]