MmuEX0052979 @ mm10
Exon Skipping
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:68179717-68212844:-
Coord C1 exon
chr15:68212593-68212844
Coord A exon
chr15:68187051-68187236
Coord C2 exon
chr15:68179717-68181158
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTTGGCATTTGCTTCCTAGGTA
3' ss Score
8.47
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
AGTTTTTGGTTATGAAGAGAAAGAGAGGGAGGCCTAAGGGTTCCACAAAGAAGCCCAGCACTGAAGAGGAGGTGGTAGAAAACCTCGTGAGCCCCAGTGAGGACGGTCCCCTGGCTACAGAGGAAGGGAGCAGACTGGCCCCCAGCAGCTTGGAGTGTAGCAAGTGCTGCCGGAAGTTCTCCAACACACGCCAGCTGCGCAAGCACATCTGCATCATTGTGCTGAATCTGGGTGAGGAGGATGGAGATGCAG
Seq A exon
GTAACGAGTCAGACCTTGATCTAGAAAAGACATACAAAGAAGATGATCGAGAAAAGGCTTCAAAAAGACCCCGGGCTCAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAGGAGGCAGGGCAGCTTTCTGGAGCGAAGAAACCCATCATCAGCGTGGTCTTAACTGCTCATGAAGCAATTCCAG
Seq C2 exon
GTTAGGTCCCACCCAGCTGAAGATCTTCACTTGTGAGTACTGCAACAAGGTGTTCAAGTTCAAGCACTCTCTGCAGGCCCACCTGAGGATCCACACGAACGAGAAGCCATACAAGTGCTCCCAGTGCAGCTATGCCAGCGCCATCAAGGCCAACCTCAACGTTCACCTGCGCAAGCACACCGGAGAGAAATTCGCCTGCGACTACTGCTCCTTCACCTGCCTCAGCAAGGGCCACCTCAAGGTGCACATCGAGCGGGTACACAAGAAGATCAAACAGCATTGCCGCTTCTGCAAGAAGAAATACTCAGATGTCAAGAACCTCATCAAGCACATCCGGGACATGCATGACCCGCAGGACAAGAAGGTCAAGGAGGCCTTAGACGAGCTCCGCCTCATGACAAGGGAGGGCAAGCGGCAGCTGCTCTACGACTGCCACATCTGCGAGCGCAAGTTCAAGAATGAGCTAGACCGAGACCGCCACATGCTGGTTCATGGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335_MULTIEX2-2/6=1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.615 C2=0.285
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGAGGAAGGGAGCAGA
R:
TCTCGTTCGTGTGGATCCTCA
Band lengths:
243-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types