BtaEX6061770 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8191365-8208831:+
Coord C1 exon
chr14:8191365-8191601
Coord A exon
chr14:8206276-8206464
Coord C2 exon
chr14:8208681-8208831
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCCTGGTATTTGCTCCTTAGGTA
3' ss Score
8.41
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGTTTTCAGTCATGAAGAGGAAGAGAGGCAGGCCCAAGGGGTCCACGAAGAAGCCCAGCCCCGAGGAGGAGCTGGCGGAGCGCAGCGCCCTGCCAGGCGTGGATGGCGTGCGGGCCCCCGAGGAAGGGAGCAGCCTGGAGTGCAGCAAGTGCTGCCGCAAGTTCTCCAACCCGCGCCAGCTCCGCAAGCACATCTGCATCATCGTGCTGAACCTGGGCGAGGCGGAGGGGGACGCAG
Seq A exon
GTAACGAATCTGACCTTGAACTGGAGAAGAAGTATAAGGAAGACGATCGAGAAAAGGCCCCAAAGAGGCCGCGGGCGCAGAGAGCGGAGAAAATCCAGAAGGTCTGCTCGGGAAAGGAGGCCCCGCAGATGTCTGGGGCCAAGAAGCCCATTATCAGCGTGGTGTTAACGGCACACGAGGCGATTCCAG
Seq C2 exon
GCGCTACCAAGATTGTTCCAGTGGAGGCCGGGCCCCCGGAAACAGGAGCCACAGACCCCGAGGCCACAGCAGCTGACCTGGCACCCCGGAGAGGGTACCAGGAGTACGCCATCCAGCAGACAGCCTACGAGCAGCCCATGAAGTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731-'6-4,'6-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.646 C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGAAGAGAGGCAGGC
R:
GGCCTCCACTGGAACAATCTT
Band lengths:
254-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]