DreEX6040878 @ danRer10
Exon Skipping
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25428902-25430979:+
Coord C1 exon
chr16:25428902-25429165
Coord A exon
chr16:25430559-25430735
Coord C2 exon
chr16:25430823-25430979
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATTAATTTTTTTGTCTGTAGGTC
3' ss Score
9.46
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AAGTCGTTGTGAAAAGAAAGCGTGGAAGACCCAAAGGCTCCACTAAGAAAGCCCAACTAGAAAAGGTCCAGAAAAACACGTGCGGTCTGCAGGAAGAAGAGTCCAGTCAAAGCCAGCCGGCTACAGCAGCTAAAGAGCAGACAGAGGATGCCAATGATCTGGAGTGCAAGAAGTGCAATCGCATGTTCAGCAACCGGCGACAGATCTCCAAACACATTTGTTTTGTAGGACTGAAAGACGCTGCTGATGAAGAAGAGTTTAATG
Seq A exon
GTCATAATGTGGATGCAGGAAGAATCAGTGATGGAGAGGAAGACAGAGAGCGGACGCCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACGCAGAATCAACAAGCGGCAACAAAAATCCTATTATTAGTGTAGTCCTTACCAGTCACGAGGCCATGCCTG
Seq C2 exon
GTGCCTCGAAGATTGTTCCCATTGAAGCAACTCCAGCTGAACCACCGTCTACTCAGACTGACGCCACTGCAGCTTCTCAGGAGGCAGCGATTAAAAGAGGATATCAAGAATATGCCATTCAGCAGGCTGCTTATGGAGAGCCTCTCAAATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987-'7-4,'7-3,9-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.883 C2=0.509
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCCACTAAGAAAGCCCA
R:
TGGGAACAATCTTCGAGGCAC
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]