HsaEX0072602 @ hg19
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:19899]
Coordinates
chr8:135620972-135649955:-
Coord C1 exon
chr8:135649704-135649955
Coord A exon
chr8:135622713-135622898
Coord C2 exon
chr8:135620972-135621122
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTATTTGCTCCTTAGGTA
3' ss Score
8.45
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AGTTTTTGGTCATGAAGAGGAAGAGAGGCAGGCCTAAGGGGTCCACGAAGAAGTCCAGCACAGAAGAGGAGCTGGCAGAAAACATCGTGAGTCCGACTGAGGACAGCCCGCTGGCTCCGGAGGAAGGGAACAGCCTGCCTCCAAGCAGCTTGGAGTGTAGCAAGTGCTGTCGGAAGTTCTCCAACACGCGCCAGCTGCGGAAGCACATCTGCATTATCGTGCTGAATTTGGGTGAGGAGGAAGGAGAAGCAG
Seq A exon
GTAACGAGTCTGACCTTGAACTAGAAAAGAAGTGTAAGGAAGATGATCGGGAAAAAGCCTCGAAAAGACCACGGTCACAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAGGAGGCCAGACAGCTTTCTGGGGCGAAGAAACCCATCATAAGTGTGGTTTTAACTGCACACGAAGCAATTCCAG
Seq C2 exon
GTGCTACCAAGATTGTGCCAGTGGAGGCTGGGCCCCCTGAAACAGGAGCTACAAATTCTGAGACCACTTCAGCAGACCTGGTGCCTCGGAGAGGCTACCAGGAATACGCCATTCAGCAGACACCTTATGAGCAACCAATGAAGTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX1-1/11=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.639 C2=0.716
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGAGTCCGACTGAGGA
R:
AGGTCTGCTGAAGTGGTCTCA
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)