RnoEX0100982 @ rn6
Exon Skipping
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109128602-109136051:-
Coord C1 exon
chr7:109135866-109136051
Coord A exon
chr7:109133447-109133597
Coord C2 exon
chr7:109128602-109130040
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCACTGTATATCAATCTCAGGTG
3' ss Score
6.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTAACGAGTCAGACCTTGATCTAGAAAAGACATACAAAGAAGATGATCGAGAAAAAACTTCAAAAAGACCCCGGGCTCAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAAGAGGCAGGGCAGCTTTCTGGAGCGAAGAAACCTATCATCAGCGTGGTCTTAACTGCTCATGAAGCAATTCCAG
Seq A exon
GTGCTACCAAGATTATTCCAGTGGAGGCTGGGCCCCCTGAAACAGGAGCACCCCCTCCCGAGACCACTGCAGCAGACCTGGTGCCACGGAGAGGGTACCAAGAATACGCCATTCAGCAGACCCCATATGAGCAGCCCATGAAGTCAAGCAG
Seq C2 exon
GTTAGGTCCCACCCAGTTGAAGATCTTCACTTGTGAATACTGCAACAAGGTGTTCAAGTTCAAGCACTCACTGCAGGCCCACTTGAGGATCCACACTAATGAGAAGCCATACAAGTGCTCCCAGTGCAGCTATGCCAGCGCCATCAAGGCTAACCTCAATGTTCACTTGCGCAAGCACACTGGAGAGAAGTTTGCCTGTGACTATTGCTCCTTCACCTGCCTCAGCAAAGGCCACCTCAAGGTACACATTGAGCGAGTACACAAGAAAATCAAACAGCATTGCCGCTTCTGCAAGAAGAAATACTCAGATGTCAAGAACCTCATCAAGCACATCCGGGACATGCATGACCCACAGGACAAGAAGGTCAAGGAGGCCTTAGATGAGCTACGCCTAATGACGAGGGAAGGCAAGCGGCAGCTGCTTTATGACTGTCATATCTGTGAGCGCAAGTTCAAGAATGAGTTAGACCGAGACCGCCACATGCTGGTTCATGGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140_MULTIEX2-4/6=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.698 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4),PF0009621=zf-C2H2=WD(100=5.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAGGCAGGGCAGCTTTC
R:
TGCGCAAGTGAACATTGAGGT
Band lengths:
250-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]