GgaEX6022382 @ galGal4
Exon Skipping
Gene
ENSGALG00000016207 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr2:142171512-142177925:-
Coord C1 exon
chr2:142177752-142177925
Coord A exon
chr2:142173245-142173395
Coord C2 exon
chr2:142171512-142172977
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTCTTTCTTTTAGGAG
3' ss Score
12.65
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTAATGATTCTGACGTTGACCTTGACAGGAAGGAAGATGAGCGAGAAAAAACTCCAAAGAGGCCCAGAGTACAGAAAACAGAGAAAACTCCATCAACTAAGGAGACTGAACAGGTTCCAGGAGCTAAAAATCCTATAATAAGTGTGGTTTTGACAGCCCATGAAGCTATTCCAG
Seq A exon
GAGCCACAAAAATTGTTCCAGTTGAGGCTGCACCCCAAGAAAGTGAACCCACTACTCCAGAAACAGTGGTTCAAGACCCATCACAACGAAGAGGATATCAAGAATATGCAATTCAACAGACTCCATATGAACAGACAATGAAATCAAGCAG
Seq C2 exon
GTTGGGTCCAACTCAGCTGAAAATCTTTACTTGTGAATACTGCAACAAGGTGTTCAAATTTAAACACTCCCTCCAAGCACATTTGAGGATTCACACAAATGAAAAACCATACAAGTGTTCATACTGCAATTATGCCAGTGCAATCAAAGCCAACCTTAATGTTCACATGCGGAAACATACAGGAGAGAAATTTAGCTGTGACTATTGTACGTTCACATGTCTCAGCAAAGGCCATCTAAAAGTCCATATTGAAAGAGTTCACAAGAAAATTAAACAACATTGTCGCTTCTGCAAAAAGAAATACTCAGATGTTAAAAATTTGATCAAGCATATCAAGGAAACACATGACCTTCAAGATAAGAAGGTGAAAGATGTTTTTGACGAGCTTCGCTTGATGACACGAGAGGGCAAAAGACAGCTTCTTTATGACTGCCATATTTGTGAACGCAAATTTAAAAATGAACTCGATCGAGACCGTCACATGCTTGTCCATGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=0.882 C2=0.335
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF127562=zf-C2H2_2=WD(100=16.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTGACCTTGACAGGAAGG
R:
CCTCAAATGTGCTTGGAGGGA
Band lengths:
250-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]