HsaEX0072605 @ hg19
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:19899]
Coordinates
chr8:135602511-135649955:-
Coord C1 exon
chr8:135649704-135649955
Coord A exon
chr8:135620972-135621122
Coord C2 exon
chr8:135602511-135602598
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTGCATCAATCTCAGGTG
3' ss Score
8
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGTTTTTGGTCATGAAGAGGAAGAGAGGCAGGCCTAAGGGGTCCACGAAGAAGTCCAGCACAGAAGAGGAGCTGGCAGAAAACATCGTGAGTCCGACTGAGGACAGCCCGCTGGCTCCGGAGGAAGGGAACAGCCTGCCTCCAAGCAGCTTGGAGTGTAGCAAGTGCTGTCGGAAGTTCTCCAACACGCGCCAGCTGCGGAAGCACATCTGCATTATCGTGCTGAATTTGGGTGAGGAGGAAGGAGAAGCAG
Seq A exon
GTGCTACCAAGATTGTGCCAGTGGAGGCTGGGCCCCCTGAAACAGGAGCTACAAATTCTGAGACCACTTCAGCAGACCTGGTGCCTCGGAGAGGCTACCAGGAATACGCCATTCAGCAGACACCTTATGAGCAACCAATGAAGTCAAGCAG
Seq C2 exon
GACAAAAGGAGTTATTCTTGTCCTGTTTGTGAAAAGTCTTTTTCAGAGGATCGATTGATAAAGTCACATATCAAGACCAACCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX1-2/11=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.716 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=PD(53.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGAGTCCGACTGAGGA
R:
GGATGGTTGGTCTTGATATGTGACT
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)