MmuEX0052980 @ mm10
Exon Skipping
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:68179717-68187236:-
Coord C1 exon
chr15:68187051-68187236
Coord A exon
chr15:68184421-68184571
Coord C2 exon
chr15:68179717-68181158
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCACTGTGTATCAATCTCAGGTG
3' ss Score
7.46
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTAACGAGTCAGACCTTGATCTAGAAAAGACATACAAAGAAGATGATCGAGAAAAGGCTTCAAAAAGACCCCGGGCTCAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAGGAGGCAGGGCAGCTTTCTGGAGCGAAGAAACCCATCATCAGCGTGGTCTTAACTGCTCATGAAGCAATTCCAG
Seq A exon
GTGCTACCAAGATTATCCCAGTGGAGGCTGGGCCTCCCGAAACAGGAGCACCCCCTCCAGAGACCACTGCAGCAGACCTGGTGCCGCGGAGAGGGTACCAAGAATACGCCATCCAGCAGACCCCATATGAGCAGCCCATGAAGTCAAGCAG
Seq C2 exon
GTTAGGTCCCACCCAGCTGAAGATCTTCACTTGTGAGTACTGCAACAAGGTGTTCAAGTTCAAGCACTCTCTGCAGGCCCACCTGAGGATCCACACGAACGAGAAGCCATACAAGTGCTCCCAGTGCAGCTATGCCAGCGCCATCAAGGCCAACCTCAACGTTCACCTGCGCAAGCACACCGGAGAGAAATTCGCCTGCGACTACTGCTCCTTCACCTGCCTCAGCAAGGGCCACCTCAAGGTGCACATCGAGCGGGTACACAAGAAGATCAAACAGCATTGCCGCTTCTGCAAGAAGAAATACTCAGATGTCAAGAACCTCATCAAGCACATCCGGGACATGCATGACCCGCAGGACAAGAAGGTCAAGGAGGCCTTAGACGAGCTCCGCCTCATGACAAGGGAGGGCAAGCGGCAGCTGCTCTACGACTGCCACATCTGCGAGCGCAAGTTCAAGAATGAGCTAGACCGAGACCGCCACATGCTGGTTCATGGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335_MULTIEX2-3/6=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.739 C2=0.285
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCATCATCAGCGTGGTC
R:
CAGGCGAATTTCTCTCCGGTG
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types