BtaEX6061769 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8206276-8215343:+
Coord C1 exon
chr14:8206276-8206464
Coord A exon
chr14:8208681-8208831
Coord C2 exon
chr14:8213893-8215343
Length
151 bp
Sequences
Splice sites
3' ss Seq
GAGTTGTGCCTCTCTCTCAGGCG
3' ss Score
7.01
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTAACGAATCTGACCTTGAACTGGAGAAGAAGTATAAGGAAGACGATCGAGAAAAGGCCCCAAAGAGGCCGCGGGCGCAGAGAGCGGAGAAAATCCAGAAGGTCTGCTCGGGAAAGGAGGCCCCGCAGATGTCTGGGGCCAAGAAGCCCATTATCAGCGTGGTGTTAACGGCACACGAGGCGATTCCAG
Seq A exon
GCGCTACCAAGATTGTTCCAGTGGAGGCCGGGCCCCCGGAAACAGGAGCCACAGACCCCGAGGCCACAGCAGCTGACCTGGCACCCCGGAGAGGGTACCAGGAGTACGCCATCCAGCAGACAGCCTACGAGCAGCCCATGAAGTCCAGCAG
Seq C2 exon
GCTCGGGCCCACCCAGCTCAAGATCTTCACCTGTGAGTACTGCAACAAGGTCTTCAAGTTCAAGCACTCACTGCAGGCCCACCTGCGGATCCACACCAAGGAGAAGCCCTACAAGTGCTCCCAGTGCAGCTACGCCAGCGCCATCAAGGCCAACCTCAACGTGCACCTGCGCAAGCACACGGGCGAGAAGTTCGCGTGCGACTGCTGCTCCTTCACCTGCCTGAGCAAGGGCCACCTCAAGGTGCACGTGGAGCGCGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAGTACTCGGACGTCAAGAACCTCATCAAGCATATCCGCGACGCGCACGACCCGCAGGATAAGCCGGTGCAGGAGGCCCTGGATGAGCTGTGCCTGATGACGAGGGAGGGCAAACGGCAGCTGCTCTACGACTGCCACATCTGTGAGCGCAAGTTCAAGAACGAGCTGGACCGCGACCGCCACATGCTGGTCCACGGTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731-'7-6,'7-4,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=0.673 C2=0.348
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF127562=zf-C2H2_2=WD(100=15.9),PF0009621=zf-C2H2=WD(100=4.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCGAGAAAAGGCCCCAAA
R:
GCTTCTCCTTGGTGTGGATCC
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]