DreEX6040877 @ danRer10
Exon Skipping
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25430559-25433916:+
Coord C1 exon
chr16:25430559-25430735
Coord A exon
chr16:25430823-25430979
Coord C2 exon
chr16:25432658-25433916
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTGTTTTGTCGTAGGTG
3' ss Score
10.17
5' ss Seq
CAGGTTCAT
5' ss Score
3.89
Exon sequences
Seq C1 exon
GTCATAATGTGGATGCAGGAAGAATCAGTGATGGAGAGGAAGACAGAGAGCGGACGCCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACGCAGAATCAACAAGCGGCAACAAAAATCCTATTATTAGTGTAGTCCTTACCAGTCACGAGGCCATGCCTG
Seq A exon
GTGCCTCGAAGATTGTTCCCATTGAAGCAACTCCAGCTGAACCACCGTCTACTCAGACTGACGCCACTGCAGCTTCTCAGGAGGCAGCGATTAAAAGAGGATATCAAGAATATGCCATTCAGCAGGCTGCTTATGGAGAGCCTCTCAAATCAAACAG
Seq C2 exon
GTTAGGACAGACACAGCTTAAAATCTTCACTTGTGAATACTGCAATAAAGTCTTCAAGTTCAAACATTCACTGCAGGCTCACTTAAGAATCCACACCAACGAGAAACCCTTTAAGTGCATGCAGTGTGACTACGCCAGCGCCATAAAGGCTAATCTTAGTGTTCACATGCGCAAACACACCGGAGAGAAGTTCAGCTGCGACCTCTGCTCGTTTAACTGCCTCAGTAGAGGACACCTCAAAGTGCACGTAGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAATACTCAGACGTCAAAAACCTTCTGAAACACATCCGCGAGTCTCACGATATGAGCGACAAGAAAGTGCAGGAATCCTACGAAGAATACAGCCTTCAGACCAGGGAAGGCAAGAGGCAGCTTCTGTACAACTGTGAAATATGTGACCGGAAGTTTAAGAACGAGCTGGAGCGTGACCGTCACATGATGGTCCACGGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987-'9-6,'9-4,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=0.509 C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF056057=zf-Di19=WD(100=8.1),PF121713=zf-C2H2_jaz=WD(100=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGATGCGGACAGATAAGG
R:
CGTAGTCACACTGCATGCACT
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]