RnoEX0100981 @ rn6
Exon Skipping
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109133447-109136051:-
Coord C1 exon
chr7:109135866-109136051
Coord A exon
chr7:109135531-109135655
Coord C2 exon
chr7:109133447-109133597
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCTACTCTGTTGTCACTCAGGTA
3' ss Score
7.8
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTAACGAGTCAGACCTTGATCTAGAAAAGACATACAAAGAAGATGATCGAGAAAAAACTTCAAAAAGACCCCGGGCTCAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAAGAGGCAGGGCAGCTTTCTGGAGCGAAGAAACCTATCATCAGCGTGGTCTTAACTGCTCATGAAGCAATTCCAG
Seq A exon
GTATGCAAGAACAGTCCCTTCTGTGCCTCTCCCCATTCGTGCAACTGGTGGTGCCCCTGTCAGCTACAGTGACTGCAGTGGGAGCTGCCCATGGCACAAGAGCAGCAGCCGTTCTCCAGGCCCAG
Seq C2 exon
GTGCTACCAAGATTATTCCAGTGGAGGCTGGGCCCCCTGAAACAGGAGCACCCCCTCCCGAGACCACTGCAGCAGACCTGGTGCCACGGAGAGGGTACCAAGAATACGCCATTCAGCAGACCCCATATGAGCAGCCCATGAAGTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140_MULTIEX2-3/6=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.000 C2=0.698
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000068291fB16861
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCAAAAAGACCCCGGGC
R:
GGGTCTGCTGAATGGCGTATT
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]