RnoEX0101014 @ rn6
Exon Skipping
Gene
ENSRNOG00000019059 | Zfp1
Description
zinc finger protein 1 [Source:RGD Symbol;Acc:1565049]
Coordinates
chr19:43882249-43885837:+
Coord C1 exon
chr19:43882249-43882387
Coord A exon
chr19:43884524-43884612
Coord C2 exon
chr19:43884768-43885837
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTTTTTGGAAACAGGGA
3' ss Score
7.07
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTGTCATTTCAGGGGTCCGTTTCATTCACTGATGTGACTGTGGACTTCTCCCAAGAGGAGTGGGAGCAGCTGGACCCCTCCCAGAGGATTCTCTACATGGATGTGATGTTGGAGAACTACAGCAACTTACTTTCAGTGG
Seq A exon
GGACTGGCCAGGACTCACCGAGCAGACCATGCTAGCCTCAGACTCGTAGAGATCCACCTGCCTGGATGAACACTGTGCTGGGATAAAAG
Seq C2 exon
AAGTGTGGAAGGCTGATGACCAGGTGGAAAAGGACCCCAGAGAACCGGATAAGCAGGCACCATCACTTACAACCCCCAAGAACCAACCACCAACTGAAGAAAGAGGCAGTCTCTTTGGAAAGAGATTGAATCTGAACACAGACTTGGTTTCGTTACGACAAGTTCCCTATAAGTACTATTTATATGGGAAAACCTTGATGTACAATTCAGACCTGCTCAGCAGTAGGAGCTGTGTAGTAGAGAAAGGAGACGAGTGTGGTGGACTTGGGGAACCACTTCTGTACCTGAAACAAGAGAAGCCCCATGCTGGGCTTCAGTACTCAGAATATAACGGAAATGGAAGGTCTCTCAGCCATACGGACGCCATCTTTAAACATCAGAAAATTAAGAGCTTGGTTCAGCCTTTTGTCTGTAATTACTGTGACAAGGCCTTCTCCTTCAAGTCCCTGCTTGTAAGTCACAAGAGGATCCACACGGGAGAAAAGCCCTACGAGTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019059_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.818 C2=0.118
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=87.2)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
ENSRNOT00000025761fB16866
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTGTGGACTTCTCCCA
R:
GTGCCTGCTTATCCGGTTCTC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]