RnoEX0101029 @ rn6
Exon Skipping
Gene
ENSRNOG00000024376 | Zfp111
Description
zinc finger protein 111 [Source:RGD Symbol;Acc:620595]
Coordinates
chr1:81042220-81050856:-
Coord C1 exon
chr1:81046653-81050856
Coord A exon
chr1:81043326-81043378
Coord C2 exon
chr1:81042220-81042346
Length
53 bp
Sequences
Splice sites
3' ss Seq
CAAAGCCCTTCCTCCCCCAGCTT
3' ss Score
6.81
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAGCTATTTCTAGGGACCTAACTACCTAACTATAGTTAAAACAGCCTGGAGTATAACCAAACGTTAGCATTCTGGGAAATGTAGTCCCAGAATGTCTTCTGGGGAAGAGCACCAGAGCTAGGCGCTTCCACTGAGGCATTCTGGGAATAGGCATTCCCGCTCCCGCAGCTGCCAAAGTCGCTTCCATTTCCTCAAGCCAAGGCGGCCTGGTGGCACTTTAAGTGAAGTGAGAACCTGGATTATTCTGTGGCCCTGTGCGCTTGTCCTCCCGGTGTGTCTCCTCGGGGACGGATCTGCGCCGGGGAGAAGTGGGCGACGGTGGAAGCGGCGGCGGAGGCGGCGGCCGGTCCTTTCTAGCTGGGCTCTGCCTGAGGTGGCGCTGCTCGGGATTCCTGGACCCATCTCAGCTGCTTGTGGAGCCCCAGAAGAGTCTAGCTTCCCATGAGAGCCTGGCAGAGGAGCTGTAATTAGAGATGTCCAGTGTCCTGAAGCCTTAAATG
Seq A exon
CTTGCTTCCCAGAGCCCTGCCTGAAAGAGAAGAGAACGATGACCAAGTTACAG
Seq C2 exon
GAGGCAGTGACGTTCAGGGACGTGGCCGTGGTCTTCAGTAAGGAGGAGATGGGGCTGCTGGACGCTGCCCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACCTCAGGAACCTCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024376_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTCAGCTGCTTGTGGAG
R:
CTTACTGAAGACCACGGCCAC
Band lengths:
144-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]