RnoINT0167747 @ rn6
Intron Retention
Gene
ENSRNOG00000024376 | Zfp111
Description
zinc finger protein 111 [Source:RGD Symbol;Acc:620595]
Coordinates
chr1:81042220-81043340:-
Coord C1 exon
chr1:81043326-81043340
Coord A exon
chr1:81042347-81043325
Coord C2 exon
chr1:81042220-81042346
Length
979 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCATGTGTTTGCTGTCACAGGAG
3' ss Score
7.72
Exon sequences
Seq C1 exon
ATGACCAAGTTACAG
Seq A exon
GTAAGTCGGGCTGCTTCCCAGTTCCCCACGAGGCTAGGATTGGAAACAGGACCCCTGCATGCTGGGTAAGTGCTCTGCAGCTGAGCCTCTCTGAACTGCATGGAGTAAGAGGGGAATTGGTGAGAAGAGAGGTCTGGAGGAGGAGGGATGAGAGGGGACAGTGGGGACATGTGCTCAACGTGCACTGTGCATGGGAAAGTGTAAAAGGAAGAAAAAAAAGAATTAGAGAAGTGGACTGGGCATCATAGGTGTAGGAGGAGCTGGGCATCATGGGTATAGGAGTAGCCGGGCATTGCCAGCTGTCTCCAGTACAAAGTCAGCACATTACCCCTGACAGTGGTTGACGCTAATTCTGAAATCCATGACTTTACAGTTAATGTCCTGGACCTAGAGACCCAGCTGTGGAAATGACATCAAGTTCCTTGCACAGCATTTTCTCTCTTTGTCCCTTAGCACCCCCCCTGTAGCCATGGACAGGTGAATAGGTGTGCTGGCTGGTGATGTGTGTCAAGTTGACACCAACTAGAGTCGGAAGGGAAGCAGGAGCCTCAGTTGAGGAAATGCCTCCTTAGGATCCAGCTGTAAGGCCTTGTCTCAATTAGTGGTCAGTGTGGGAGGGCCCAGCCCACTGCAGGTGGGGCCATCCCTGGGCTGATGGTCCTGGGTTCTATAAGAAAGCAGGCTGAGCAACCCATGATGAGCAAGCCAGTGAGTAGCACCTCCCCGTGATCTCTGCATCAGCTCTTCCCTCCAGGGCCCAGGCCTGTCTCAGTAACCATTCTGACTTCCTTCAGTAATAAACAGGAATATGGAAGTGTGAGCCTAATAAACCCTTTTCTCCCCAACTTGCCCTTTTGGCCATGGTGATTTGTCCCAGCAATAGAAGCCATAACTAGGACAATAGATGCTGTGTGAACAGACGCTCGGGTCCTAGTGGCACTGGATATGAATCTGTGGTGTCATGTGTTTGCTGTCACAG
Seq C2 exon
GAGGCAGTGACGTTCAGGGACGTGGCCGTGGTCTTCAGTAAGGAGGAGATGGGGCTGCTGGACGCTGCCCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACCTCAGGAACCTCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024376:ENSRNOT00000051473:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]