RnoEX0101044 @ rn6
Exon Skipping
Gene
ENSRNOG00000016417 | Zfp136
Description
zinc finger protein 136 [Source:RGD Symbol;Acc:1565635]
Coordinates
chr18:746641-752616:+
Coord C1 exon
chr18:746641-747122
Coord A exon
chr18:750776-750902
Coord C2 exon
chr18:751079-752616
Length
127 bp
Sequences
Splice sites
3' ss Seq
AATACTGTGTTATTTTTTAGGAC
3' ss Score
10.71
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GTTCCTCACCATTTTTCTTTCTGGTGCCATAGTCCTAAACTGTATGGTCAGCTCAGGGAGTGCAGGATTATTCTACCCTGCAGTGTGAAACTGACACCCCCACCCCACCCCCGGCGCGACCCCCAATAGTCATAAGATGAGTGATCAAATCAAAACGGGTCAGGCAATGCGGAAGAGCTTTACCACCATCTTTCTTTCTGGTGCCGCCACAGTTGCGACTCTGTTCTATCAGGTAATGGAGTCCCTAACTTCAGCTTCAGTTTTCTCATGACCGACAAACTCAGTAGCAGAATTCAGGTCTCCGGAGGCCAGAGGAACGGAGCGGAAGTTCCTCACTCGCCATCTTTCTTTTGGGCAACGCTCTTGTCACTGCTCTCTCTGTCTGCTGAGGGAGCTTGGAGTCGCTGGATTATAAGAGGCTGTAGAACTGCTCCACCCTGGAGCCGCGTGTAAGGATGCTTGAAGTCCGGAGCTCAGCCATG
Seq A exon
GACTCTATATCCTTTAAGGATGTAGCTGTGAACTTCACCGCAGAGGAGTGGGCTTTGCTAAATTCTTCCCAAAAAAGACTGTACAGAGATGTGATGCAGGAAACCTGCAGGAACCTGGCTGCCATAG
Seq C2 exon
CAAAAAAGCAAGAAGACTGTATCCTTGAAGATGACTCTGAAAATTTATGGAAAAATTTTCCCATTTCAATTCAGACTGAATACAAACTATGTGAGAGTCAAGAATATGCAGAGAAACCAGGCACATGTAAGGAGTGTGGGAAATTCTTTAGTTCTCCCCAAAGTTTTCTGAAACATGTGAAGACTCACACTGAAGAGAAAACTTATAAATATAAACAAACTGAAGATGGTTTTAGCAGACACAATTTTGTTCAAGGGCATGAAAGAATGCATGCTACAGAAAAGCCCTATGTGTTAAAGCAGAGTGGGAAAGACTCTTTGACTCTTGCTGGTATTCAACAGCACATAATAACACATAATGGAGATGGGCCATATATATGTAAAGTATGTGGTAAAGTCTTTCACTCTTCCAGTTCTTTCTTGACACATAAAAGAGCTCACACTGGAGAACAGCTTTATATATGTAAGCAATGTGGCAAAACCTTCACTTATTCTAGTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016417_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=4.3),PF139121=zf-C2H2_6=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTCTCTGTCTGCTGAGG
R:
CCCACACTCCTTACATGTGCC
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]