HsaEX0073050 @ hg38
Exon Skipping
Gene
ENSG00000105708 | ZNF14
Description
zinc finger protein 14 [Source:HGNC Symbol;Acc:HGNC:12924]
Coordinates
chr19:19714091-19733097:-
Coord C1 exon
chr19:19732956-19733097
Coord A exon
chr19:19714361-19714487
Coord C2 exon
chr19:19714091-19714151
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATATGTGGAATGTTTCAGGAC
3' ss Score
6.34
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
ATTCCTGGCCCATGGGAAGATTGCGTTTCACCTGCTCCTGAAGGCCGAAGGTGGCTCTAGCGCATCCTTTGTCGCGCCGTGACCTGCAGGTACTGACAGATCCGTAGGGAGGACACCGTGACTTCCCGGACGCTGGGAAATG
Seq A exon
GACTCAGTCTCCTTTGAGGATGTGGCCGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTTCACAGAAAAAGCTCTATGAAGATGTGATGCAGGAGACCTTCAAAAACCTGGTTTGTCTAG
Seq C2 exon
GAAAAAAGTGGGAAGACCAGGACATTGAAGATGACCACAGAAACCAGGGGAAAAATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105708-'1-5,'1-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000344099fB8057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGGCCCATGGGAAGAT
R:
TTCGATTTTTCCCCTGGTTTCTGT
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development