HsaEX0073050 @ hg19
Exon Skipping
Gene
ENSG00000105708 | ZNF14
Description
zinc finger protein 14 [Source:HGNC Symbol;Acc:12924]
Coordinates
chr19:19824900-19843906:-
Coord C1 exon
chr19:19843765-19843906
Coord A exon
chr19:19825170-19825296
Coord C2 exon
chr19:19824900-19824960
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATATGTGGAATGTTTCAGGAC
3' ss Score
6.34
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
ATTCCTGGCCCATGGGAAGATTGCGTTTCACCTGCTCCTGAAGGCCGAAGGTGGCTCTAGCGCATCCTTTGTCGCGCCGTGACCTGCAGGTACTGACAGATCCGTAGGGAGGACACCGTGACTTCCCGGACGCTGGGAAATG
Seq A exon
GACTCAGTCTCCTTTGAGGATGTGGCCGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTTCACAGAAAAAGCTCTATGAAGATGTGATGCAGGAGACCTTCAAAAACCTGGTTTGTCTAG
Seq C2 exon
GAAAAAAGTGGGAAGACCAGGACATTGAAGATGACCACAGAAACCAGGGGAAAAATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105708-'0-4,'0-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGGCCCATGGGAAGAT
R:
TTCGATTTTTCCCCTGGTTTCTGT
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)