RnoEX0101165 @ rn6
Exon Skipping
Gene
ENSRNOG00000042283 | Zfp267
Description
zinc finger protein 267 [Source:RGD Symbol;Acc:2323100]
Coordinates
chr2:122865100-122866146:+
Coord C1 exon
chr2:122865100-122865226
Coord A exon
chr2:122865420-122865521
Coord C2 exon
chr2:122866051-122866146
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGCTAGTCTTCTCCTAGCAGCCT
3' ss Score
2.01
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
GAACAGTTAACCTTCAGGGATGTGGCCATTGATTTCTCTGGAGAGGAATGGGAGTGTCTGAACTCTGAACAGCAGAATCTATATACAGATGTGATGTTGGAAAACTATAGGAACCTCGTCTTCCTGG
Seq A exon
CCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTGCATCATGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATGATAATGGACTGAACCTCTGAACCT
Seq C2 exon
GTCTTGCTGTGTCTAAGCCGTACCTGGTTACATGTCTGGAGCAAAGGAAAGAGCCCTGGAGTGTCAAGAGGCAGAAGCCTGTGGCCCTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042283-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000067090fB16897
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAACCTTCAGGGATGTGGC
R:
TGGGAACAGGGCCACAGG
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]