RnoINT0167922 @ rn6
Intron Retention
Gene
ENSRNOG00000042283 | Zfp267
Description
zinc finger protein 267 [Source:RGD Symbol;Acc:2323100]
Coordinates
chr2:122865100-122866146:+
Coord C1 exon
chr2:122865100-122865226
Coord A exon
chr2:122865227-122866050
Coord C2 exon
chr2:122866051-122866146
Length
824 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTCTGTTTTCCAATCACCAGGTC
3' ss Score
7.98
Exon sequences
Seq C1 exon
GAACAGTTAACCTTCAGGGATGTGGCCATTGATTTCTCTGGAGAGGAATGGGAGTGTCTGAACTCTGAACAGCAGAATCTATATACAGATGTGATGTTGGAAAACTATAGGAACCTCGTCTTCCTGG
Seq A exon
GTAAGGGTAACCTCTCCACAGAGTTTCTGACTGAGTACTAAAATTCATTTTTCTTGTGTGATGGTTTGTATATGCTCGGCCCAGGGAGTGGCACTATTAGAAGGTGTGGCCCTGTTGGAGTAGGTGTGTCACTGTGGGTGTGGGCTATAATACCCTAGTCCTAGCTTCCTTGAAGCTAGTCTTCTCCTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTGCATCATGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTTATAAAACTTGCCTTGGTCATGGTGTCTTTTCACAGCAGTAAAACGCTAAGTAAGACATCTTGCTTTTCTGAGTATATCTTGGGAGCCTGTGTTTTCAGGGTAGAAATCTGGGGAGGTAGAATTGATATAGGTAATCAGTATTTGTATTTTTAAATCTCTATCCTCTACCTCTCTCTTGAGGTAATATATATATTGCAAATTAGAATTAATGGTAATTATAATAGCTAAGAGGCATAAAATATTGTAAATTATATCTTAAAGTCCAGTTATTCCTCCTTTAACTTTGATTTGACAGCAGACAAAGGTGGAGCTCAGAATCTATAAACTGAAGATCCATTGCTCTATGTCTGTAGGGAGACAGCATTTGGAAAGTAATGTTCTAGAATAATGTTATATGTTTATGTATTTTCTTTTCATATGAACATTATACTAGGGCAGATATGTTACTAACTATGAGAAATATCAAGTAAATATTGTGGTCTGTTTTCCAATCACCAG
Seq C2 exon
GTCTTGCTGTGTCTAAGCCGTACCTGGTTACATGTCTGGAGCAAAGGAAAGAGCCCTGGAGTGTCAAGAGGCAGAAGCCTGTGGCCCTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042283:ENSRNOT00000067090:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGTTAACCTTCAGGGATGTG
R:
TGGGAACAGGGCCACAGG
Band lengths:
222-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]