RnoEX0101260 @ rn6
Exon Skipping
Gene
ENSRNOG00000017318 | Zfp322a
Description
zinc finger protein 322a [Source:RGD Symbol;Acc:1594230]
Coordinates
chr17:44026243-44031354:+
Coord C1 exon
chr17:44026243-44026324
Coord A exon
chr17:44027290-44027377
Coord C2 exon
chr17:44031281-44031354
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAGGTGTGCTCCTTTTTCAGGTA
3' ss Score
10.02
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
AGGGAAGAATTAATTATTGTGAGTAGTTCTGGATTAGAGACCTTGTGGATCCGAAAGAATAAGTCTTTGGGTTCTTGTTAAG
Seq A exon
GTAGTGCATTTCAGGCTGCTACTTGAATCATATAATGGAGAAAGCTGCATGGAGGAACAGTTGGGCAGAAGAAACAAGATTTTCTGAG
Seq C2 exon
AAAGCCGTTTTTTTAATTTTGATTTTTCTCAAGACCAAAAAGTGAATACTACCTGTCGTCTGTCTACATTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017318_MULTIEX1-4/4=3-C2
Average complexity
C1*
Mappability confidence:
78%=78=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGTAGTTCTGGATTAGAGACCT
R:
AATGTAGACAGACGACAGGTAGT
Band lengths:
135-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]