RnoEX0101345 @ rn6
Exon Skipping
Gene
ENSRNOG00000004268 | Zfp386
Description
zinc finger protein 386 (Kruppel-like) [Source:RGD Symbol;Acc:2985]
Coordinates
chr6:143913496-143917575:+
Coord C1 exon
chr6:143913496-143913569
Coord A exon
chr6:143913831-143913913
Coord C2 exon
chr6:143914266-143917575
Length
83 bp
Sequences
Splice sites
3' ss Seq
TAATTAACTATGCTATATAGAGT
3' ss Score
1.31
5' ss Seq
GGGGTACTG
5' ss Score
2.74
Exon sequences
Seq C1 exon
GATGTCTTCATTCATGCTTTTTTATTATTGAGGACTTCGAAACCTGTCCTTGGGAAACAAACCTGTTATGTGGA
Seq A exon
AGTAAAGAAGACCTGTGGTTGACAAAAGGAACAAACTTCACTTCCTGATACAGTGAAACTACTTGGCTTTGTGCTTACTTGGG
Seq C2 exon
CTCTTTCTCATCATTGTACCCAGAACTTTTCACCAGAACAGATCCTAAAATATTCCTTCACAAAAGGAACTAATGGAAGTTGTGGCCTTAAGAGTTTATACTTAAGGGAAGATTGTATATATATAGATGAGAGTAAAGCCCACCATGGTAGAGATATGCAATGTCTAATTACAAGCAATACCAAAGATGTCATTGACAGCAGAGATCAAGAACACAAAACCGCTCTGACAATAACTCCTGTGAGGCCAGATACTTTGGATGAGCCAAGTATCTATAACTGTAAATATCCACAGGAAAGTTTTCAGCATGACTTAACTTTGAAAGAAAGTTTGGAAGATCTGATAGATGGGTTAATGTTTCACCCAAACAGTTCCATAGATAAAGAATTAAGAAGCAGAGGACTGATATCAACAAGTGATCAAATTGAGACTTTCTATACTGAAAGATCCTTACTCTTCAGTCAGCAAATAGCTATCTCCTATGACCCAAAGCACAATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004268-'13-11,'13-10,14-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
ENSRNOT00000091884fB16930
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCCTTGGGAAACAAACC
R:
CCATGGTGGGCTTTACTCTCA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]