RnoEX0101516 @ rn6
Exon Skipping
Gene
ENSRNOG00000048394 | Zfp560
Description
zinc finger protein 560 [Source:RGD Symbol;Acc:2323078]
Coordinates
chr8:21386825-21389242:-
Coord C1 exon
chr8:21389142-21389242
Coord A exon
chr8:21388242-21388368
Coord C2 exon
chr8:21386825-21386925
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCAAGTGTGTGTGATTGTAGGAG
3' ss Score
3.19
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
TTTTCCTACTAGGCTTATTTTCTAGGAACCCAGGCTACTTTCATAATGAAAAGACAGAGATGGAAAAGAGGGTGTCTGACTGCTGGACAAACAGTTACCAG
Seq A exon
GAGTCAGTGACTTTTGAGGATGTGGCTGTAGACTTCACCCAGGAGGAATGGATTTTATTGGACACAAAACAACGGAGCCTTTACAGAGAGGTGATGCTGGAGATCTACCAGAACCTTGCCACATTAG
Seq C2 exon
GATGTCAGCTCATCAAATCCAGATCCAGCTCTTGTTTGGAGGCTGAAGAGTTGAGAGTTGTCGAAAGAAGAGTTCAACAAGGTAAATGTTTGGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048394-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGCTTATTTTCTAGGAACCCAGG
R:
CTGAAGTCCCAAACATTTACCTTGT
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]